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1

Complex host genetics influence the microbiome in inflammatory bowel disease

Knights, Dan, Silverberg, Mark S, Weersma, Rinse K, Gevers, Dirk, Dijkstra, Gerard, Huang, Hailiang, Tyler, Andrea D, van Sommeren, Suzanne, Imhann, Floris, Stempak, Joanne M, Huang, Hu, Vangay, Pajau

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

2

Captivity humanizes the primate microbiome

Clayton, Jonathan B., Vangay, Pajau, Huang, Hu, Ward, Tonya, Hillmann, Benjamin M., Al-Ghalith, Gabriel A., Travis, Dominic A., Long, Ha Thang, Tuan, Bui Van, Minh, Vo Van, Cabana, Francis, Nadler, Ti

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 2.50 MB

english, 2016

3

US Immigration Westernizes the Human Gut Microbiome

Vangay, Pajau, Johnson, Abigail J., Ward, Tonya L., Al-Ghalith, Gabriel A., Shields-Cutler, Robin R., Hillmann, Benjamin M., Lucas, Sarah K., Beura, Lalit K., Thompson, Emily A., Till, Lisa M., Batres

Journal:

Year:

2018

Language:

english

File:

PDF, 8.23 MB

english, 2018

4

Food Microbe Tracker: A Web-Based Tool for Storage and Comparison of Food-Associated Microbes

Vangay, Pajau, Fugett, Eric B., Sun, Qi, Wiedmann, Martin

Journal:

Journal of Food Protection

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

5

Antibiotics, Pediatric Dysbiosis, and Disease

Vangay, Pajau, Ward, Tonya, Gerber, Jeffrey S., Knights, Dan

Journal:

Cell Host & Microbe

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

6

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

Gohl, Daryl M, Vangay, Pajau, Garbe, John, MacLean, Allison, Hauge, Adam, Becker, Aaron, Gould, Trevor J, Clayton, Jonathan B, Johnson, Timothy J, Hunter, Ryan, Knights, Dan, Beckman, Kenneth B

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

7

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

Clayton, Jonathan B., Al-Ghalith, Gabriel A., Long, Ha Thang, Tuan, Bui Van, Cabana, Francis, Huang, Hu, Vangay, Pajau, Ward, Tonya, Minh, Vo Van, Tam, Nguyen Ai, Dat, Nguyen Tat, Travis, Dominic A.,

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.83 MB

english, 2018

8

Dietary Patterns Correspond with Microbiome Composition (FS07-02-19)

Johnson, Abigail, Vangay, Pajau, Knights, Dan

Journal:

Current Developments in Nutrition

Year:

2019

Language:

english

File:

PDF, 531 KB

english, 2019

9

Substituting whole grains for refined grains in a 6-wk randomized trial favorably affects energy-balance metrics in healthy men and postmenopausal women

Karl, J Philip, Meydani, Mohsen, Barnett, Junaidah B, Vanegas, Sally M, Goldin, Barry, Kane, Anne, Rasmussen, Helen, Saltzman, Edward, Vangay, Pajau, Knights, Dan, Chen, C-Y Oliver, Das, Sai Krupa, Jo

Journal:

American Journal of Clinical Nutrition

Year:

2017

Language:

english

File:

PDF, 696 KB

english, 2017

10

Chemotherapy-driven dysbiosis in the intestinal microbiome

Montassier, E., Gastinne, T., Vangay, P., Al-Ghalith, G. A., Bruley des Varannes, S., Massart, S., Moreau, P., Potel, G., de La Cochetière, M. F., Batard, E., Knights, D.

Journal:

Alimentary Pharmacology & Therapeutics

Year:

2015

Language:

english

File:

PDF, 913 KB

english, 2015

11

US immigration is associated with rapid and persistent acquisition of antibiotic resistance genes in the gut

Le Bastard, Quentin, Vangay, Pajau, Batard, Eric, Knights, Dan, Montassier, Emmanuel

Journal:

Clinical Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 421 KB

english, 2019

12

Substituting whole grains for refined grains in a 6-wk randomized trial has a modest effect on gut microbiota and immune and inflammatory markers of healthy adults

Vanegas, Sally M, Meydani, Mohsen, Barnett, Junaidah B, Goldin, Barry, Kane, Anne, Rasmussen, Helen, Brown, Carrie, Vangay, Pajau, Knights, Dan, Jonnalagadda, Satya, Koecher, Katie, Karl, J Philip, Th

Journal:

American Journal of Clinical Nutrition

Year:

2017

Language:

english

File:

PDF, 862 KB

english, 2017

13

Wild primate microbiomes prevent weight gain in germ-free mice

Sidiropoulos, Dimitrios N., Al-Ghalith, Gabriel A., Shields-Cutler, Robin R., Ward, Tonya L., Johnson, Abigail J., Vangay, Pajau, Knights, Dan, Kashyap, Purna C., Xian, Yibo, Ramer-Tait, Amanda E., Cl

Journal:

Animal Microbiome

Year:

2020

File:

PDF, 1.60 MB

2020

14

Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks

Vangay, Pajau, Hillmann, Benjamin M, Knights, Dan

Journal:

Year:

2019

File:

PDF, 3.16 MB

2019

15

Classification of Listeria monocytogenes Persistence in Retail Delicatessen Environments Using Expert Elicitation and Machine Learning

Vangay, P., Steingrimsson, J., Wiedmann, M., Stasiewicz, M. J.

Journal:

Year:

2014

Language:

english

File:

PDF, 551 KB

english, 2014

16

Refinement of the Listeria monocytogenes B regulon through quantitative proteomic analysis

Mujahid, S., Orsi, R. H., Vangay, P., Boor, K. J., Wiedmann, M.

Journal:

Microbiology (Society for General Microbiology)

Year:

2013

Language:

english

File:

PDF, 367 KB

english, 2013

17

Fecal concentrations of bacterially derived vitamin K forms are associated with gut microbiota composition but not plasma or fecal cytokine concentrations in healthy adults

Karl, J Philip, Meydani, Mohsen, Barnett, Junaidah B, Vanegas, Sally M, Barger, Kathryn, Fu, Xueyan, Goldin, Barry, Kane, Anne, Rasmussen, Helen, Vangay, Pajau, Knights, Dan, Jonnalagadda, Satya S, Sa

Journal:

American Journal of Clinical Nutrition

Year:

2017

Language:

english

File:

PDF, 834 KB

english, 2017

18

Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome

Maldonado-Gómez, María X., Martínez, Inés, Bottacini, Francesca, O’Callaghan, Amy, Ventura, Marco, van Sinderen, Douwe, Hillmann, Benjamin, Vangay, Pajau, Knights, Dan, Hutkins, Robert W., Walter, Jen

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 3.05 MB

english, 2016

19

Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks

Vangay, Pajau, Hillmann, Benjamin M, Knights, Dan

Journal:

Year:

2019

Language:

english

File:

PDF, 3.16 MB

english, 2019

20

Multi-omics analysis of inflammatory bowel disease

Huang, Hu, Vangay, Pajau, McKinlay, Christopher E., Knights, Dan

Journal:

Immunology Letters

Year:

2014

Language:

english

File:

PDF, 1.39 MB

english, 2014

21

Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice

Livanos, Alexandra E., Greiner, Thomas U., Vangay, Pajau, Pathmasiri, Wimal, Stewart, Delisha, McRitchie, Susan, Li, Huilin, Chung, Jennifer, Sohn, Jiho, Kim, Sara, Gao, Zhan, Barber, Cecily, Kim, Joa

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 7.84 MB

english, 2016

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